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doi: 10.1016/j.pharep.2015.01.002 376 Lux-BattistelliC

The ikra pipeline automated the RNA-seq data analysis process, including read quality control (Trim Galore version 0.6.6 (Babraham Bioinformatics, UK 34 with Cutadapt 35 and transcript quantification (Salmon version 1.4.1 using reference transcript sets in GENCODE release 31 for humans)